Release

ProPhylER 1.0 is live now.

News

January 5 2010
The ProPhylER paper is now published in Genome Research

March 12 2010
Searching by name is now supported on the search page

March 12 2010
Searching with hg 18 coordinates for evaluating coding SNPs is now supported

Contacts

prophyler [at] prophyler.org
arend [at] stanford.edu

Resource Links

Ensembl
Uniprot
PDB
WuBlast
Probcons
Semphy
Jmol
Java

Other Links

Sidow Lab
Stanford Pathology Dept
Stanford Genetics Dept
Stanford School of Medicine

Funded by

NIH/NHGRI

Subset Statistics

Master Set Statistics of the Clusters that have Subsets

Figure 1 (above). Number of clusters that have alignment and analysis subsets by Phylogenetic Scope. Most clusters that have sufficent data for subsets are in the Eukaryotic scope. The narrower the scope, the less likely it is that a cluster has sufficient information for subsetting.

Figure 2 (below). Tree Length and Number of Sequences in clusters that have subsets as a function of Phylogenetic Scope.


Statistics of the Subsets

Figure 3. Number of cluster subsets by Phylogenetic Scope. Subsets tend to be enriched for the Vertebrate scope, reflecting the good sequence representation of vertebrates and the gene duplications that occurred at the origin of vertebrates.

Figure 4 (below). Tree Length and Number of Sequences as a function of Phylogenetic Scope of the subsets. The typical trend of narrower scopes having less tree length and fewer number of sequences is also reflected here.


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Last updated 10/08/08