Release

ProPhylER 1.0 is live now.

News

January 5 2010
The ProPhylER paper is now published in Genome Research

March 12 2010
Searching by name is now supported on the search page

March 12 2010
Searching with hg 18 coordinates for evaluating coding SNPs is now supported

Contacts

prophyler [at] prophyler.org
arend [at] stanford.edu

Resource Links

Ensembl
Uniprot
PDB
WuBlast
Probcons
Semphy
Jmol
Java

Other Links

Sidow Lab
Stanford Pathology Dept
Stanford Genetics Dept
Stanford School of Medicine

Funded by

NIH/NHGRI

Statistics on Clusters that are not yet Viewable

Figure 1. Phylogenetic scope and number of clusters that are not yet viewable. Figure 2. Number of total sequences (red) and number of human sequences (blue, right axis) in the problematic clusters.

Table 1. Prominent proteins for which we have clusters but which are currently missing from our analyses because they require significant curatorial work. To expedite analysis of any of these, contact us.

Many ZN-finger proteins
Many transporters
Many homeobox proteins
Rabs
Translation elongation factor EF1A
Hsp70
Aldo-Keto Reductase
Alpha and Beta Tubulins
Myosin Heavy Chain
Histone H2A
Dynein Heavy Chain
FGF-R
Kinesin
Ankyrin
Acetylcholine Receptor
Beta and Gamma Crystallins
Ubiquitin ligases
Ddx RNA Helicases
Immune-type receptors

Table 2. Clusters for which we will likely never have analyses

All mitochondrially encoded proteins
Olfactory receptors
Cytochromes P450
Protocadherins


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Last updated 10/08/08