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ProPhylER Search Search by Peptide Sequence The surest way to find a ProPhylER cluster is to search with a peptide sequence. Please enter the sequence in FASTA format ( description ) or as raw sequence in one-letter peptide code. Search by PDB Identifier If you're starting with a specific protein structure, you can also search ProPhylER with its 4-character PDB identifier ( PDB link ). Search by UniProt Accession ProPhylER includes UniProt sequences from all Eukaryotes ( UniProt link ). You must search by the 6-character UniProt accession ( examples ), not the less stable entry name. Search by Ensembl Identifier ProPhylER also includes Ensembl sequences ( Ensembl link ) from species for which the gene annotations are likely to be of high quality because of substantial cDNA or EST evidence. These species are currently limited to:
Both Ensembl gene identifiers and protein identifiers are supported ( examples ). Search by ProPhylER Cluster Identifier If you already know your specific CLUSTER ID, you can use it to quickly access the ProPhylER Interface Search by ProPhylER Cluster Name If you are looking for your favorite gene, search by name to access analyzed ProPhylER clusters of interest Search ProPhylER by Human (hg18) Chromosome Coordinate To obtain MAPP P-values for human coding SNPs, search by hg18 chromosome:coordinate to access analyzed ProPhylER clusters of interest. Enter multiple values separated by a semi-colon ( examples ). Return to ProPhylER Home Page. | ||||||||||||||